NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10125079

Scaffold Ga0315909_10125079


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10125079 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2165
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101250793F009526GAGMPATYITGRNLTLSINSVSYADQASTVTLERENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAASSAPDTSLPFSFDVNGDTFTGNVFPVFPTVGGAATDVLTTSLSFIVEDGTVARA
Ga0315909_101250794F009746GAGGLADLATYRSTLAGTLAAAGRVVYSYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITCIVNAADNQAALKNLETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
Ga0315909_101250795F009679AGGAMALITLSELKAVLGIGDIYADAIVQAVADSAENIILSYLIFDDVAINGVSLTNNVARFYCYDNTFVVGQALTVTNCGSPFNGSRTVTKEGVDEYGVTFFEAAITNADITKRKIIPNGRAVLTSQAALYDTIPEVRESALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
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