NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10128319

Scaffold Ga0315909_10128319


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10128319 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2128
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021095Metagenome220N
F032997Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101283192F021095AGGVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNYGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELAGWSLNPYFRIGSSFNSVRPLTTPQAFTVYQGGSNFLAINGTKYTTVSANDTWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVQFLANAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKMWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0315909_101283193F032997N/AMSVTLIAYPLNDSNVEAPYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAVGFSDLTQGNLVAGWWQLGPSLYV
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Biomedical Sciences Research Center "Alexander Fleming"
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