NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10155075

Scaffold Ga0315909_10155075


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10155075 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1879
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032154Metagenome180Y
F047498Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101550753F047498N/AMIIKMKITEAEEWAIHNRASQVVFSQDGLGRGQQYNTKLNNHERVTEYAESLGAEMVVARYFGLDYDINENKAKVKADVGKGLEVRWTSYINGSLIIYPYDRVDDIAVLVVGRSPELYIVGWLPVKSAMQKQFKNSQQDSWWVNQDSLNPIGDLARSSYAATHI
Ga0315909_101550754F032154AGGMFAALVCIGLRRPVEATGVAMGEFEIINLESGKRYKVEKDGSELRDEVIPPAIEWCDKGQHFAPKLGGRDDYGILWICLACQS
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