NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10155235

Scaffold Ga0315909_10155235


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10155235 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1877
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015201Metagenome / Metatranscriptome256Y
F067537Metagenome / Metatranscriptome125N
F087066Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_101552351F015201N/AELTKMNNALITYLIDKKKKATRKDVESKHAIKQLEKQTTATF
Ga0315909_101552353F087066GGAGGMTENQIQFLRGCCVTILAFAATGLIAAIFLSPDEPKNNSKFEVLDQYEGCSVIRYTDPTTRWHYFLKCS
Ga0315909_101552355F067537N/AMTTKRQFDYKIGDRVAERPKPHGIYTSNQQTRERISQYRNQRYGEVVGINYKNNSRGASQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
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