NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10321555

Scaffold Ga0315909_10321555


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10321555 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1145
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F002387Metagenome / Metatranscriptome565Y
F007468Metagenome / Metatranscriptome350Y
F013184Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_103215552F002387GAGGMSDPHGTIGYYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIYDEFNKFYELKEGDEDYLE
Ga0315909_103215553F013184AGGAGMMSLISSMNLKREMRITLNKYGFVIRLEGAVMANNEKEAHEKINLHLNDLGDVDSARYDLNWPDVSWDMEYELC
Ga0315909_103215555F007468GGAGGLTKSSRFLEYMNLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNASNERYE
Ga0315909_103215556F000263AGGMETTELPAHLQRMVDAGVTGLDIMHGELKNLMLMAEQDLASALEQEELSEEAMDSMVRTECEGRLDALVAVYELTYQLSFAIGARDEA
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