NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315319_10125694

Scaffold Ga0315319_10125694


Overview

Basic Information
Taxon OID3300031861 Open in IMG/M
Scaffold IDGa0315319_10125694 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1269
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007802Metagenome / Metatranscriptome344Y
F041255Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0315319_101256942F007802AGGAGGMTTHFSSGVTNVRGKANGTSLFSGIKQPLITGGTSPQEWSFQDDFVQFSQVTTAPWTIVDPGGTSYMLAQYPQGWLRMGDASPVAADISIAATEDVYQINTNKKWYFETSIAVTDVTELNTFVGFCANGHVNPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTETGQTAIQYKLFLNGNIVGTQAATTVPDDLLMEMKIMYESKGILTNDLYTDYVQTVQQR
Ga0315319_101256943F041255AGGAGMPNVSAVKAKFFEPDGVDNDQVSATGTATTLVIADGGPYGNLTETITLTSS
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