NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315319_10581317

Scaffold Ga0315319_10581317


Overview

Basic Information
Taxon OID3300031861 Open in IMG/M
Scaffold IDGa0315319_10581317 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027156Metagenome195Y
F084099Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315319_105813171F027156N/ALRWYDNFTLDRDSPNHDIGIVKEVQREGENFFGDDVHQYVVIIDWCKGPHHSFHDQEEYEESIRTNEIVVV
Ga0315319_105813172F084099GAGMKIGDVVMMNTALTPERYGLGLIQKIVPAREVLPGCEPRLVYHILWPDGGISNQYDIEIVLVSRI

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