NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315280_10016971

Scaffold Ga0315280_10016971


Overview

Basic Information
Taxon OID3300031862 Open in IMG/M
Scaffold IDGa0315280_10016971 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8207
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003098Metagenome / Metatranscriptome507Y
F032903Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0315280_100169714F032903GGAMPLVFLQMAHEGVCLERKLLVPDAKVDDVASACQRAFKEMGLKTMKTDKISDGDTTVLAGEGALVPLTLRTLLYPFSIQQYIKAAQRSGVHVVISPSKDGVMIYSCGLALDELTGKPAKYDEEDVEEITDTMEALDFENKFLAKIKANFPKTSEIE
Ga0315280_100169716F003098N/AMVIALGTPITRPLRFVFQFPPIHGAFDAGDGVVYVFGGLHESEIENIIVHETLHYVLLRVAGTRASLKLDNIYTIFDS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.