NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315280_10035902

Scaffold Ga0315280_10035902


Overview

Basic Information
Taxon OID3300031862 Open in IMG/M
Scaffold IDGa0315280_10035902 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4641
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5094Long. (o)-110.5094Alt. (m)Depth (m)88
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039194Metagenome164Y
F046170Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0315280_100359023F046170AGGAGGMAIRIEDFGEIAYGGAVTLTEWWDNKRIADGKITSKDIFKKASFYTYLGVGLVATLCSVFGWMKRWEKWEEHISHGFFYDLPRFAYNLSQSMGAAGRSGAGSAAVQEAQRIIRERQVAAKQLGAGRETQRTYQPEMEQAIAF
Ga0315280_100359026F039194AGGAGGMPDLYIFKAQVGMFDPVALQKHNVCIHYQQNVHYRKVDFLEGIPPFQCIDITAGAGLAAASPTGRVNIVNLEMADSEFGLWRWYPIDDAQVRLYHPSGISKFQLRNLQVPIDMNILFRDPNLVSTEIAVWQNNRPAVEAINGHAFALGAVRLIALGYRFHTVNLESGKESDPELVKAIKAGKEPCTDVWCSGRGIGD
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