NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308408_1044550

Scaffold Ga0308408_1044550


Overview

Basic Information
Taxon OID3300031865 Open in IMG/M
Scaffold IDGa0308408_1044550 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308408_10445502F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIDGCADVACKAVTAARLLSKAETLDEAVQAFRAAPELDDLPQPGADIFAQVYSIFENEKSRLFYSRVFGESLPGSSEDEKVVYAFLSFLEALATALERGVGG
Ga0308408_10445503F093910N/AYIRPRLWVSHEELLASPLEGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRVPLNQASIENVATAWGYESKNWVKRRVRISIAHRNIQGKYVQVRMVSPITTVPPIAELPEDPNPPQEPDDVPF
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