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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031867 Open in IMG/M |
| Scaffold ID | Ga0326511_10000014 Open in IMG/M |
| Source Dataset Name | Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 135306 |
| Total Scaffold Genes | 209 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 164 (78.47%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.5357 | Long. (o) | -121.7593 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041054 | Metagenome / Metatranscriptome | 160 | Y |
| F052997 | Metagenome / Metatranscriptome | 141 | Y |
| F084920 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326511_1000001412 | F084920 | GAGG | MDNEFGMQELYSVQLKSTYPIEIKGVQYAAGEVVAAFDKIQIANFQEINREIAAQGGYQNKKLVIWDRTEGVNLIFTQGVFSKTQLGLMHNARVLSIDEGKRIRIAQRDELETDSEGKITLTHVPIDSWIFVYNRETGEKLTDLTWVDKTQGILQTPLIYKEVVVDYEYGYDNGADIELIGEEIFDGFLTLEGRSRIKDDITGETHTAIIYIPKLKITSDFNLTLGQNAQPVVGQFKGTALSIGGRKTSKALEIYYLDEDIDRDSEWR |
| Ga0326511_100000148 | F052997 | GGAGG | MGYYEDVYLKRLNHYGVDWQSRIQGQREENFRRQLMKSVYYVEFEYKGVMREGELTPMRQNETKTMHYLLTDVHLDMPNGTILFIPDKDNILCPWLIYYLEDIKASGYNRYIVLKMTHYLTWKNRQGKKCSTWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFIIPLNENIRKDDYLEVTQGKLTEAYVVTGYDIQSTPGVEFVSVDPQYIRDKSDPPIQDVDDNADDFYWLNRGGAE |
| Ga0326511_100000149 | F041054 | AGGAGG | MNVRNCTDIGVNAQYIMKRLLANQNLLKLLYYTDKDPLSHDDLTPEQIQDEVFEKLVKIVPRVGPKETAHSIIAVRIARARGLASNSEFKNVNISIEVFVPMTQWIIKDTNLRPFAIMGEVQNSLNGKKIEGLGKLTGGDFSLNFLTEEISAYEQTFVLTSYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |