NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315297_10198632

Scaffold Ga0315297_10198632


Overview

Basic Information
Taxon OID3300031873 Open in IMG/M
Scaffold IDGa0315297_10198632 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1650
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.536Long. (o)-110.4254Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077958Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0315297_101986322F077958AGGTGGMKPQTWRSLTWGALGVMVLQLGCLDSIVRTLAPVNDPQVVNTPTSFRFTATDLENVSDQISWVWTNSAPQAAFKHNTFIHHGYGIVMITDGVGQMVDSTLLEPDLETETRSGTAGDWTITLMLAGARGRVDFTLTPKP

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