NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315310_10002309

Scaffold Ga0315310_10002309


Overview

Basic Information
Taxon OID3300031876 Open in IMG/M
Scaffold IDGa0315310_10002309 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)11917
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015693Metagenome252Y
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315310_100023094F015693AGGAGGLLYIVYFNLKNGVSEEEFVKKLKEWGNFSEGKVKGFVSGKLYRHHNGANPRRYQLHMEMKDYGAWDRFSAFLEKDAKGAKIFQEWHKLLDLNTHFDEFAIEIPL
Ga0315310_100023098F039458GAGGLKETTEKKMKALLIEHSTPPLEVIIPILEKAGRGEQELTTQLYNTYTSLAKGMKEILGLKDKNMKTLAKVFEISLGFEGVKFEPIELSESRYALSIPDCPMIHVGKDVSFNVKSKFCDLICTSGSRAFMDTLLSPNRGTCTWDKALIKGAGKCTIAFELVKSR
Ga0315310_100023099F093178GAGMSYQKNSVLLISILLVAVGLAFALAWLNIAKSLSYADLKTALETTTATFGTLLGIITAGLMFTQGKFSELASELTDKAPNYLAEVFSLEKMQSISTLLLALQKRFAELAATTTVTEERNLYERARVKASSMFVNLAVLLNLKLKQQGLPDTAQVSEMDPNLYKVYQKRRQGVKKEWQVFDLIQQITNIWEAPTVFFAENSRSQSALQADLTSSLSILKFKETVDKSSANIRLEASKTLSDLDNEVSEISKRLHEDKIPQLLSQMRHASTLRGKYFYLALIFIAAPLLINLLILPQLSETTAAFFQPIISITSLLSVMGVLFLLLYIYRILSE
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