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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031877 Open in IMG/M |
| Scaffold ID | Ga0315314_1000037 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 193171 |
| Total Scaffold Genes | 231 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 172 (74.46%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Indonesia: South Sulawesi | |||||||
| Coordinates | Lat. (o) | -2.7726 | Long. (o) | 121.4938 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003098 | Metagenome / Metatranscriptome | 507 | Y |
| F007209 | Metagenome | 355 | Y |
| F102445 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315314_1000037115 | F007209 | GGCGG | MLRYRYSLTTDGERRAAKNEFYLQQTPKYKGYTEKIFKALYTKEPLTIREISYHTGIDKRAVNGIITFNVMAGYIRRIAL |
| Ga0315314_1000037133 | F102445 | AGG | MTNFRQSFKMNRRQLLFATIMGSLAFTVRNAGLYVLVYPPFRFDPRWVFSLLAACWGGPAGGLIAGTLAAMKLPYPQIDLAAIPAHFFVGLIARWLILRKKNSLYACFIWPITGVPLYWLTTLIFAPASATIILIPVLVFIGVSSALLAFVVGLAVEKRANNLLGFLNIRDAPRIIPSAH |
| Ga0315314_100003780 | F003098 | GGAG | MAKSLEFVFQFPPIYGVFDTGFGVVYIFGEQHEDVVEDVIVHETLHYVIQKVAGKRASLKFDRVYGEISTPKD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |