NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308404_1000184

Scaffold Ga0308404_1000184


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000184 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19992
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y
F048124Metagenome / Metatranscriptome148Y
F060673Metagenome / Metatranscriptome132Y
F076715Metagenome / Metatranscriptome117N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10001841F060673N/AAALGIRVRNDFRQKPMSFIGALFQRIGVGIEGKQQRVDGGKRVRVYRLVNVERARLRTTGIRKRHADRAAPVYEFLGTPVTTPYRNKRKSGVVTAATVVH
Ga0308404_100018410F025895GGTGGMSDVIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVAAVCFFVLAYVFGALAYRYDLVPTWRFIQPIANDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDIRVLQWMVYFFVFFDIVTDYKEAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCTVTALLLAANVRAASGGGGGGR
Ga0308404_100018414F048124AGGAGGMATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDENGDIQYRIIRWCEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFVLRKAGVIQ
Ga0308404_100018416F002982GGAGGVKIQFERHPQSICAVLTEPGECDRIINVDRASDAIDVFALDVSPAAYKPLDALFALTRVVCVEIERREGGWRVEVVYWHKTHGTLAQYEAEAATLSEALARCVWALAR
Ga0308404_100018417F007976AGGAMPSNELAHFLNVALDIQATPFSGIHVADGVILATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEALAEGTWIGSIAVVGNRVTATAQTTRYDEKTGGEVAGEYCEVTLPEFYCPRASVARMLATLTDEGRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKADNDTHWYSVAQLRRGLRLFGKNSRLSVRRNSSGWLAFGDQWGYTFAVTPFIKHN
Ga0308404_100018424F005631GGAGMQVSVSVDLDNALRKLLPRAPQIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENPASYARYVYGMPQARVHSGRWASVRDAAEAALKEAIAALKERGR
Ga0308404_100018427F105262AGGAGGMLVQETIQPLLRYFNANVTAPSDTSVISIANAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSAQLTDKTIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAQIAIEISAFPARDVPATLPTDWTRVL
Ga0308404_10001843F006252AGAAGVTTFTLRIWSALKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGEQPVAALEVKRRSVRSDTYPTTIIPQSVVDAAKRLTIPVFAAILFLDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308404_10001846F004307AGGAMFKELIRNGEEARPELNGAYVGRFLGVKERQRPTFETRNAPEPVMEDVFVFEFEVEDDDGNPLRVSKWVRKPKRLTHPNGGKVTNLYKVLAALYGVSVMTDAQLERAEEFVQEAVGREYQLTIETKPSGWCEIVHIAPVRKARNRKKEEDEEVPF
Ga0308404_10001847F008499GGAMKKSRSEPRWKRKERDALRALQATFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFDRIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGENKGDGDA
Ga0308404_10001848F005028GGAMRDDDLRAAMSFFAERLRDAEIDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDATDAHLGLCWRLDEDVLTVYTDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKAKDVVED
Ga0308404_10001849F076715AGGAMWWKIEEIPHQELEDWERTLLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKAPEGAYLVGKWTLKKKGWMWYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.