Scaffold Ga0308404

Basic Information
Taxon OID	3300031878 Open in IMG/M
Scaffold ID	Ga0308404_1000318 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15144
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

15144

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (69.23%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021427	Metagenome / Metatranscriptome	219	Y
F035590	Metagenome / Metatranscriptome	171	N
F042114	Metagenome / Metatranscriptome	158	Y
F049435	Metagenome / Metatranscriptome	146	Y
F050068	Metagenome / Metatranscriptome	145	N
F052993	Metagenome / Metatranscriptome	141	N
F056129	Metagenome	138	Y
F056953	Metagenome / Metatranscriptome	137	Y
F064749	Metagenome / Metatranscriptome	128	N
F078076	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308404_100031811	F056953	AGGAGG	MYSNFKFQSAKAELAFAFTHKPTDSMGQVEIAFLKALLSTAALNGCVTPDDVYRAVESSGAFDLDLNDDEKDKIIADLWNIGDQYIGALSPAQARELRKLHKLCLRVMEHNDLDAMMEIADLL
Ga0308404_100031816	F049435	N/A	VFYCFVNSSPASRAQTAIAFYAHSKPFIIPNLALRIYLGFVSNDSSPADVEKIKALMRAKKGTIMSAKDQKLFTDPILIYNDVFAVNTPNGVQLDGFFDLSFCVSRASELQDCFSQISKDLERIKRSLSKYASPKRDAISIITPMPSPDQIRQSLKQSLQPIVASGALKLSATVADYICDFILHLFHRDVEGIIYEIWDVNKLVVRSSDNRYFDVFNTWDEEGVEEGWEFPAFDDES
Ga0308404_100031817	F035590	N/A	MMGMDKKKIILEQIERLLEHHPHNERDIFYLSFDGYVVLSFSVDDNGIVTLEEAYVDGQFSIDLNRI
Ga0308404_100031818	F052993	AGG	MSSLHQFKAKTFQRVAKKFDLRCYAFSHRDNQWLVAIRGNIVILSPTLIPIAPDIIDIRKLGNEKDYELFLALTGIGVRQSLRYQLVATGNFVALYPKYNHAIFARSNQHVYSTRWRRIALAHAQYVSRRVKQPPCMQIAEDVERGKLMIALNYTRLGSFYIFVNGIPIDYAYPFHEQCSPQVYFGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKNASPDYHDGHGQKEDYPGTD
Ga0308404_100031821	F042114	N/A	MDEIARVETLNEAFKAVQLRVPFLYQHASWRALYQPLDSQRARLFIINPNRYPQPNEYANAMAEMAIFVAHAQPKRFECNGWKCLQFDLERKTLQ
Ga0308404_100031823	F050068	GAG	MAIAIWHNDKLAITDGVLEKIVWGDDDAFWKHALTLDAYEFSRFCSDTIEEHLRGLNWLTLWGEPDGKFPLFSDREDGEIFAYKKRRSIFFFADRDYRMLLAHAVRGRFDIDVTDSGRMLFWTRLTLNEECWKMLAMKMWMSFMDYEYLGGIYNPEVRLIELEVRNLMEDQRWESAIALAAFACSEAKLRNDDAMFRFFHAICERIQRFWPVHPKLFDRMAWR
Ga0308404_100031825	F064749	AGGAGG	MDDYVLLCDGPKVAFTTRSRAHLDDSFWQQFVRDRRLFFWDTDIMLINLASGLRWFDVTQVGTAHRHGDLLIRREAGAFLFDVIQDEVASTVAMCEWTDGRLCPVPIYSSLKCDVILWEHLIDYWNDAYRQAVYDVYGLHAHGWAYHTLLLVYELFDAGKYDYAHETLKSAIARARIEGDDKLIAKFESLEQQLLAK
Ga0308404_10003183	F078076	AGGA	MAWYSASMYRLSSLHDRIRLQETACARAQEYLHDADVPVWQIDPNELAHRVIELGLPLSDDPDKAKACCIDACRRLHAKMLRDAISAHLGDDVKHVRLVRLLLISPESLENLGDIADNFTDCYWGDDDPDGDLLLYPTSCFNRADLAVALDAGAKVVHGYEFAYPRSVSNDPLPRGWCGYRTARKGYALQRDVASVIWAASVMREIRRNNGDLAYTLAHCRIA
Ga0308404_10003184	F021427	N/A	MSESINIPLFTDESYGISVDPTGWRTHSHWHALCNYLDLLDSRYASIARIMIDNILAIMRADFEQDTLESKLQRDTFNYRQRILRKYAPMAHRPESFIV
Ga0308404_10003189	F056129	AGGAGG	MSYNGWTNHMTWSMSLYCESLEDVRALREYLEEIAASLPLPASDLLESAIGEVNWYELERAFAPAEAAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308404_1000318

Overview

Ecosystem & Geography

Associated Families

Sequences