NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000620

Scaffold Ga0308404_1000620


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000620 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10776
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_100062010F002795GGAGGMATDSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVEFPARLQFLRDGSGRPTIRLYVDEGVR
Ga0308404_100062011F008135AGGAGGMRAMNDPRTERLLVSAGASIARVLDARQRHAVALALEVCRYIVAALPPDDELTFGDMVRLLRWFGEGFNRDAEGDDGDG
Ga0308404_100062012F002229GGAGGMVTLLTLDGVEDVDYVPSDLEVRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRVMCGCVEDEDEED
Ga0308404_100062014F004024AGGAMSSERDYLRQPSSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYESIAPIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
Ga0308404_100062015F002978GAGMSVRDWRVMLVPWADRRLWFVQARRGRRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPAVLPGSPGAPGA
Ga0308404_100062016F000642GAGGVQEISIALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDAVGGWRALPASYGDAGIVADGVTYPASLPALRAGRELIWIARCESAALIEHQALERAREAAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVAGLQALVAQILALVGER
Ga0308404_100062017F001381GAGMQYVVATLYVLCWLALAAGAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308404_100062018F000855GAGGMDWLEDFFSKVVSWFDERAASIYNAVVAFINVLVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGDIADYTGLMYMLVDYVAYAAVVQQALAAQLTIVTIGLAFRAWLVIRRVVLVS
Ga0308404_100062019F011940N/AVPRYTLMPITPPPGGDDMSWDGSLVGDLMDGLEALGRAVAPPAGRICDLPVPVLADAPEYGFRDALPDFVAGLCGFFSVASPVLGFVRLPVTLLVVGFVFWSAWRVFRSLS
Ga0308404_10006209F002372AGGAGMPTRREDRFWSVVHRRSSHLRALLDSMDDIDVVITYELDYYPYAIVELMRVREDAPSLVLRLVYVQANRQWEYHSEFVLRVVEAALQLVHEYRADLSMGGAEGV
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