NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1000760

Scaffold Ga0308404_1000760


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1000760 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9744
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10007603F016100AGGAGGMLKSVKIERFKEYSELMRVVSRSEACPATNKDRIVPLNYELLIGSHLPEPDWRRLGALVVALFRSFAVVDIEIWQTDTGIWVADALVDFGGVRRLRKGEGETPLHAVIELITDIQRY
Ga0308404_10007604F072382AGGAGGMKTIYHTKDVWFPPFSIKIEPERGTWFADVYVRYAENPSLDTKYNAYIGADNFLAETPIPAVDRRDVAKAIESLVFDYGLVGLVIYPTKEGWGASINLCQELENQYLHGTGATPADAIRNSNYPPPLRNV
Ga0308404_10007605F014738GGAGGMKLDVLLLICAFALAFVHPDAAQVAATAVLVLLMVRIERGRRARKKKSAPVVH
Ga0308404_10007606F007404GGAGGVDIVEIFQLLAAGHNGLTAVDYVWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSIELGALGRVLTGAGAGVLVGYSGYIPFVAGVVAPTLLPALIDKIAWFVERRRR
Ga0308404_10007608F012577AGGAGGMLVAITKPHQQFSVPLTVADYEFSTSDDGDERGRVTLPPVYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEAKDGSITWHALGFGALQRDARISVVQNMTDMTRWKPVGAGFMTGSGYDSRGDLWEYEVVEAIGFPHVRIRTKKAFIITNATLFFIAYLFEQPERYVTVRTNESIIVLPAIVTGLADGVWVAPVTAIPQPNAYTLTLGAFTGLSSTGTVTATTCYGWVIGVRASGVETIAGTTSVTFRAIVNLSDIFGINPALTYTDLGVLGWCCDVYLPSQTNIKIEKPDANLREIIEQSDDSFVQVRYPRKRFLRDRPRPVIDFRTDSTLTWRFPDTMRAVDISKAPNRVYGQYRGYWTDHLTAPSVILSIEYRRQMLASRNASVGEYGSKALAETRRDEAAIALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYVIVPGYYRNAKITARTITRERTTYTVSFNPDDFVTALR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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