NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308404_1002449

Scaffold Ga0308404_1002449


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1002449 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5131
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10024496F000855GAGGMDWLEDFFSKIVGWLDQISAGVHNAIIGWVNGLIDIWNGWMDSLLHPAQAMPSVPALRWVVDWLGGIVDYTRLMYMLVDYVAYAAIVQQALTAQIGIVIVGLGFRAWLVVRRVVLVS
Ga0308404_10024497F001381GAGMQYVIATLYVLCWLALAAAAALVLPRWALPVALVQLAVAYVMLRSWLTAAAGGGD
Ga0308404_10024498F000642AGGAGVLALCAVGAAVWYMRRREAGAGRVCGWLLLYDAVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHQALERARESAALAGLWRGGGQWLDLLRVLGVVLPAAFAYFTWAQVSALQSLVAQILALVGER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.