NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1012644

Scaffold Ga0308404_1012644


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1012644 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1978
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus marinus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026171Metagenome / Metatranscriptome199Y
F026459Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10126442F026171GAGMRNKSVGHNISLRTLREAIKAARLADLPVAKALKALADMPEARAFQIEPEVLRRMLLESLPEQYATFLFDQAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE
Ga0308404_10126445F026459AGGAGGMNSQKVEMLRTINAIEATICPPANSIAMLVAALTAMGSGETVQRALYRVERRAPEDVIKDAEQLIDVLYEIGEGVIAMKLERRLAELREGQSSDAIAGLWELVDLLPHDAYMSFGFAVELAQIRCGEHPNPQELLLDIDFDREGFRFGPAWEFWGERAPEAIKVARAAFIAALLHAAGLGDEPEYPEPLAD
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