NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1021129

Scaffold Ga0308404_1021129


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1021129 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10211292F008135AGGAGGMRAVNDPRTERLLVSAGTSIARVLDARQRHAVVLAIEVCWYIVAALPPDEDMTCRDVVRLLRWFRNGFQEDGQEDGDGD
Ga0308404_10211293F002795AGGAGGMATSGLVLRGMVAAYREFVSRKDGKLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFVRDGSGRPVIRLYVDEGVR
Ga0308404_10211295F015735GAGGMVVYHHWSVEWHPRDNPPHGLPRVVCIARLAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGAGYEVVWRLSVVVDDADGDAPPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFADEHFRDHSAYFGLLEPGA
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