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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031879 Open in IMG/M |
| Scaffold ID | Ga0306919_10034615 Open in IMG/M |
| Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3219 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Puerto Rico: Rio Grande | |||||||
| Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012287 | Metagenome / Metatranscriptome | 282 | Y |
| F045228 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0306919_100346152 | F045228 | N/A | MAGKIDKPQSYFLRADDGEEWELWTFSEGKGPQFIRHLAAPGEVPGNAIVALPVCQTVTFPSWVTTGDREVIPEILHLQLEKRGLLAKNGSGSMMDCRVIEMRNGRALVVATVFQPDFPEELTFERASCFEPSVYTLALPQDRLAIWREKERLAVAATRGNEPLIAQILGDRELSDTAVIELKCIVLQLQLQDFCGNLLGIHLFGNFGAEEAERLQKVLGLRVTRDSVPPPSLPAVRSRLLPPEVSILHRKRRRRRQIWSGIGFLAGLYLLGIAAFVGYLYWQRQVAANLRRQIQQQEPTVAAIQKTAERWRQVEPAVNPKLYPVELLYQAASLLPPDGMRLTRFEVEKGKVIIRGEASTAPAAFKFAEDIKARPELQMFHWQMPSPTLRPDGRAEFAIEGDPKFAKTD |
| Ga0306919_100346153 | F012287 | N/A | MVGLSSQSKEIQNLRKLTKSEKRLSLLLCIAIFAMANFYGLSYLIDLHSTLSREVADLRGEERTNQVWLKEKNFWLNRKQWIDRTQPRIRSNQIPQSELLESLTSTAAAGHLEIQEQSFGAISSTPNYQSVAVRLKLSGSLQDVIKWLVQIQQPELFQAVTSFSLKSANEPPTVSLELEVARWYAPNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |