NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315318_10052943

Scaffold Ga0315318_10052943


Overview

Basic Information
Taxon OID3300031886 Open in IMG/M
Scaffold IDGa0315318_10052943 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2176
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F049924Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0315318_100529434F049037GGAGMTESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPLAITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGAIEDLHEGKSSKRLRYAKAACGQVVLEAKARESTTRQYDHLGAVVRRQMGRNVAALRSDEDQGEE
Ga0315318_100529435F049924GAGMRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRVKAVEKVMNSKTLRDKYLWEGWKAMPLMKIYKGLQYRFNQDLPLEFADSMSVYSR
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