NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316039_113647

Scaffold Ga0316039_113647


Overview

Basic Information
Taxon OID3300031891 Open in IMG/M
Scaffold IDGa0316039_113647 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009116Metagenome / Metatranscriptome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0316039_1136471F009116N/APTWPNSFSASVLVHHNRDPRPTFFRWFYDFSQQKDRGDGLVLFRDEEWFSTILYDHASKMEYNLLFQPGVAVCFTNALNRSLPHPTFANVQYLGKGIINYVPVYHWFERDQARGITFQVWDTQSARRDIVRLDFDDERNHRSGSWTFFEFDKTPNNPDIYKLPADVLGQCTSAPEGVVIKSPVGL
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