NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326507_1256230

Scaffold Ga0326507_1256230


Overview

Basic Information
Taxon OID3300031899 Open in IMG/M
Scaffold IDGa0326507_1256230 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)626
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008062Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0326507_12562301F008062N/AKFFVVLLLALGFVSTKRLREIPVDQIYDGVVHLFKGMAETEEAKCAAVLTNNKAQILEIINAAIAEVKAGTPVETAVQNAALKLMGIDGLVSECNVLAMPAIITKFTTKEGLVEIFQTCIDNIDDIYAWGEKIKEGIQNKDYNAAAEALGHILSIALDFKVNL
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