NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307406_10162620

Scaffold Ga0307406_10162620


Overview

Basic Information
Taxon OID3300031901 Open in IMG/M
Scaffold IDGa0307406_10162620 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1606
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092686Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307406_101626203F092686N/ASEPKTLWLIPSVQAGVWRAVTATLEMVNNPKLSAVFVHPMYGPNGFRETEPEARTFQNVLTATHGGTHNVLKSEVENISRTFHTKFNIATTTEFGAEEHDRITAYSQGLSYCVGKLIFQRADLAALVQKEMPDLYNSFRANQELIIDFLRINSYMPQVIAAFNDAWEQSSKTTLTDILNAFHTADSTLNRGAGSPISTKWYEKLRMASHVR
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