NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302322_102338552

Scaffold Ga0302322_102338552


Overview

Basic Information
Taxon OID3300031902 Open in IMG/M
Scaffold IDGa0302322_102338552 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0302322_1023385521F057229GGAGGMSNKWKRYLDRALQEGEMFGLVFTTLMLIVVEGCFVYWLHRIQLPDRQFTAPGFLVVPPWYREPRFEVTLLLTIAAGMLFQVCRGLWGVWRARNRTGSAEIVKSLRRRVSAAASVAALAGLNLALAAWLR
Ga0302322_1023385522F029879N/AVFPDVTIDAPVTLQEVDTEFRAARRNRADIGITNHALNLLLEPRNPFEPKRVRKPKMEAVVFGTLLALVVSAVLAFNLAAPRLY
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