NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306921_10097155

Scaffold Ga0306921_10097155


Overview

Basic Information
Taxon OID3300031912 Open in IMG/M
Scaffold IDGa0306921_10097155 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3410
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030585Metagenome185Y
F071543Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0306921_100971552F030585N/AMMFNSNVAKFFLMVLIVAVTASAQMQEAERASLPERGSENYRLLVDEVADGAVHVAYAKRFVQVHEGSLTGRQCQQYSHILVAYAAQLAVVRRAGVSPQSKFWNDVRAYSISTIGAPGVPIPGRETSKYWVATGSEAQDRELRRTVSLEIDEARSQLIRTAGYSPSAIEPNCRTASQELTTQAER
Ga0306921_100971553F071543AGGAGMTQTAKLEIVWRNPRPPQRQQRWQQINLLSGTGHYLVQELVPTSIGSFWTTTLSFEVVLGGRAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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