Basic Information | |
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Taxon OID | 3300031912 Open in IMG/M |
Scaffold ID | Ga0306921_10214957 Open in IMG/M |
Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2253 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013471 | Metagenome / Metatranscriptome | 271 | Y |
F043580 | Metagenome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0306921_102149571 | F043580 | N/A | ENIGLPNQRTLLIKRPTMGGPGKIILKSSQQVLNVLRVRLDWARPGVVRLVDNVPNGALIANGGKMYAPEEVDGTTLTPIADSWEAKILTTSVTDQAERIENGIDYSIAIPDKVERARIELLVNGLQLDQTLILWLNGRACGPIALEIPDLTDPGYDKASSGIAHFIGWRKGTFLLQGEQLIVGDNHFQFQTPPNSQVAIRDFLIQVEYASN |
Ga0306921_102149574 | F013471 | AGGA | VRICEGRSSNGFVLWEIMLALTIFAVVAVALTTALQQTVETSILLRDESEVRLEMQNLLAEATSVKVKPGKSEIQTGGSRVIYEREIRAVEAKTARGEVLADLYEIVIKASWKSSGRDRSESAALIVYQP |
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