NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100003502

Scaffold Ga0308175_100003502


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100003502 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10883
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036344Metagenome / Metatranscriptome170Y
F064075Metagenome129N
F094372Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308175_10000350210F094372GGAMPRDDKANDQLGQSYTSTERKQVYYIDGAGVAWRAYERRRAGQKPALVFESPNAIRLVRDYPANWHTLPRAALEALSWCV
Ga0308175_1000035024F064075GGCGGMALNLNVPVRNLAGDTLTSLNGNIGFFLLDFEYQKSVAKWLALRFGVNGIGRLGTSLEALVASGISAAMGGYIGATVPVWSKPNFLISAVADAKNNKQWDVDPYTFVRDVADSGYTPGNKAVLLSSERVTRWSFGLRGAWAYKPWAGLTANIEPGGANGDVSGSKSLSTFGVLAGFDLSKLWDVPISTSVGYRLRTGSGKSGNISGGYRSAQVGVYYNALSSVLIGGDLFYSTIRVQGGTIPDLDAVQFRLVTHIDF
Ga0308175_1000035025F036344GGAGVSEQMFLIEARRMRRGDRPAGIARFIVTGGSRYAALSKLRVYYDTSDVDSLTATPVSGIIPIAGAMVHDMRRATPESEPSQTPEKPDAGDDDEPWKRSA
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