NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100038309

Scaffold Ga0308175_100038309


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100038309 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4040
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015146Metagenome257Y
F089136Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1000383093F015146GGAMRIERRADEASAESWSDQELLQRMRHDEALAIREFYRRFTPALWKLARQAQVQPALRDDTVTDCLSDAAIHLMQPTAAIPANLTGYLVAMFRHRLANDRRATQRRTATGTAAAWLSDGERVVREVVSEASIRASAGPASEAPPLSPVLERLSRIIDAGITDDERQILRWVSASIPQRLIAEWLGITHNAARVRVLRLRERLIELALRDAGPWRPGERQELYEFFRRSGLSERARRAFEGSRATGGPERSRRSAGRKPRKEGEDQ
Ga0308175_1000383095F089136GAGGMPVRLIELAIRAHRQLGRRQLTEFSFRLAFVIDLAYVGLGALGGAALGRAATPLAPTGRQPAPACVADAVQRLH
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