NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308175_100328919

Scaffold Ga0308175_100328919


Overview

Basic Information
Taxon OID3300031938 Open in IMG/M
Scaffold IDGa0308175_100328919 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1570
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F015268Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0308175_1003289192F007088AGGAMQLFVHDPSYTDRLAAFLTSVGRRAVVGAADRVDLDESPEDTQNLELELYLRVWRVLYPDAQVELALS
Ga0308175_1003289193F005548N/AVLRWLSSLFRRGRRDEASPIREAEAYARSYGERTGEIVNVARVEPKPIPRRTGDMTGELLRRAFESKLDSRGRAVS
Ga0308175_1003289194F015268N/AMGRVRWSVRQGRIGEFDAPELMDGFRSLNPVHEPKLGELLRLPDGSGPWRVVDWAVADRADAPGNVLVVEPFAA
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