NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310916_10090404

Scaffold Ga0310916_10090404


Overview

Basic Information
Taxon OID3300031942 Open in IMG/M
Scaffold IDGa0310916_10090404 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2440
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061442Metagenome131Y
F077833Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0310916_100904041F061442N/AMAGQVQMDADRDPQAIFMALESVLRMIVKDMGSPKGIGEFARFLRDNPDKFPMFSTVPHSAPSNEQLRRCKATLRRFVFEKRELGHTDTTIFGAFMNMYMYVGSQALGALNLADHIENWDPEHQARLQQVGLRSSYELDDEEGQVFVALTPDRYPIGVMGRRNAVGDLFVSRIIAFPMGDFATAIEKIKQSGMELILGSEAKELLCKLEQVQ
Ga0310916_100904044F077833GGAMNNKPLEREPIDRVRARLEALLKANAAPRCGARSKRTGKPCQGAVARGAYDRLPEMAADLVSRG
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