NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310913_10577616

Scaffold Ga0310913_10577616


Overview

Basic Information
Taxon OID3300031945 Open in IMG/M
Scaffold IDGa0310913_10577616 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)797
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041383Metagenome / Metatranscriptome160Y
F042049Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0310913_105776161F042049GGAVRKHNKVFTTLPVPEPAEQLGFGDDLIEAFYKLTPSEREIVMSIVDRLRASVTGYDFDDFDLQAAAMKLLTYHRLVLHNSDRQNSVLYARWLSSITMVEKKMTLHIDPGLVPHLERLKDHQKKDSERASVKLASQY
Ga0310913_105776162F041383AGAAGMVIAKETRQTAGESAKWSFSADGKPLSIDEFLETYRKHGVFYEGKEQWLKGVSKVTWENFFLVCTEELDDISQRAAKMLVTYCLEIVEDVASRIRGPLTSAKISDA
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