NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310910_10206803

Scaffold Ga0310910_10206803


Overview

Basic Information
Taxon OID3300031946 Open in IMG/M
Scaffold IDGa0310910_10206803 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012820Metagenome / Metatranscriptome277Y
F046295Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0310910_102068031F046295N/AFRNRAVRRNEAVGPFTVSVAREVFRSIGKQMTWLQAEKCKLALAQYLRENNCTDAGYCGLSTMLARRVEDELRSDNDVFAQGVWGKSWADIFAGDVTEEFVPNDFELRRTGWFAARRLRRAISTMTDFAHQILLDPALAVEAPWNDVAHRSGLVPRE
Ga0310910_102068034F012820N/AVRLSQKFQKLFTRDAAESLWEHAGRWIHPVSSRRILATIDKGELAKLRENYPYRPNARKINAYEDADY
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