NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308406_1016883

Scaffold Ga0308406_1016883


Overview

Basic Information
Taxon OID3300031948 Open in IMG/M
Scaffold IDGa0308406_1016883 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0308406_10168833F005302AGGAGGMSHSGVLAGLYAGNFAVEISTNNTTWTAVSNATVKIDDVELNRPSGEAFVGGSSDYATITVGKREPVEITLTFLYNEDTNSAVNTIFDQFQSTSPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPSDADPYVAMVTVRTPSLRRYTLGNSPTDLS
Ga0308406_10168834F004791AGGAGGMDKPAEIYDIEAIRVDRNALTIREAASVLNNELTAPVVARLVRKAVGDQADRFPLRALKAVYERVLPQIFEPDETVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAALLLKKIFDSIGDEGNE
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