Scaffold Ga0214473_12205082

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0214473_12205082

Scaffold Ga0214473_12205082

Overview

Basic Information
Taxon OID	3300031949 Open in IMG/M
Scaffold ID	Ga0214473_12205082 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	531
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)		Depth (m)	197
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099971	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214473_122050821	F099971	AGCAG	MIGVAPETISVWKRHPQWQQELDRWRQVAGAPLQPIQLRLQLESLETTLGAFKQLELIMENATKRVRTSNGISEQPDWPTRLKACRLVIAATAAAIPELGGRPDRRTLRIQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.