NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1002511

Scaffold Ga0308417_1002511


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1002511 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12074
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002179Metagenome / Metatranscriptome586Y
F004170Metagenome / Metatranscriptome450Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_100251110F002179GGAGGMSDLSLFASPLVRQAARNLCTVEWLSENNTWSSDSFYRRYFWRTRRMMAVTPDEAAAWLPALAFAVSCEKDADVLAELARQPLPEPLPSEAIPWRDRLIQVWEQYRPATAWEKTIRLAALVRLDRRVERLPEWLREARQNLDLGWDDRRLRLATLAGWRPRPGDRPASEDIRKAVSQWVQFWKKLYRAPGPKLDGLIAAAALLHLAEAGWLPSGPSPERLRAEFRQRVQQQWSVSTDEDMEILRILLFSVPADASAPERLRQDITDWLELIRGDVDWEKKEAVW
Ga0308417_10025116F004170GGAGGMNDSPDRGNRPVAPSVSPLVRQAARNLHRLELMAGNTAWSSNWLYRWNFWRFRQILVQTPDGAAAWLPALAFAVSREKDPYVREKDPYVLAEFARWPLPEPLPPEALPWRDRLIQVWEQYPAALTWEKTIRLSALVRLDRRAERLPEWLAEARRALDLAPGNRHPRLAALAGWRPRPGDGLPHGDKAEAARAWGRFWEESYKSPDMDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQVQPWTTFYPERSVIGMLLASVPTDASAPERRQQDIMAWLELTYGNVDWKKREAVWGMLAAWQREGVLERGGIGRGRLQELSLLPDLARALECEWHSGTLLAMAGYIPGAVEVSAHPEAARAVVAHWEALSRNDDWEIRQTAWVARWNLMRAGVLTAEEQTRFGADDVEAIGAEKTWAALLTLAQIQPPKPFPLGNWIRRLSDRNNECRLAAHLAIHGWLVDMAGGEQRRQMRQALRRAGQEGAGNRPVAPFVNLPPEVLPDFRRLREIETALAAGHLPPSPDVGAGNRPTPRTVPARLPEAQPRTGPPGITGQTTGRTAGSEPPARHPFPEAVRHE
Ga0308417_10025117F004170GGAGGMSDPSLFASPLARQAARNLHTVEWLSGNDTWRSDWLCRQYFWRTRRMMAMTPDEAAAWLPALAFAVSCEKDADVLVELAWWPLPEPLPPEALPWRDALIQSWEQHPAATNWNKSFRLAALVHLDRRAERLPEWLREACRALDLGLYDRRLRLAALAGWRPWAGDAPPHGDKTGAAQAWVRFWEGRYRPSPWEPDGLLAATALLHLAEAGWLPSGPSPERLREEFRQRVQQVQQWPVSYDERSVLRMLLASVPADASSPKQQDIMKWLELTHRNVQWEKREAVWGMLAAWQRESVLERSGRGRLPEPPLLLLGLARTLKCEQDSSVLLAMAGYIPGAVEVSAHPEAARAVVARWQTLSQGDAWVARLAAWVARWNLLRAGVLTEEEQGRFGADYMDAIKSEKERAVLLTLARITPPGTFPLATWAGRLSDQDDRCRLPAHLAIHGWLVEVMERANGEWEGRPAGRPYEWRVASGSSLPATRCPLVRAVPGTAPTTRQYGQFPELPLPLAITRRQVRQVLRRAGQEVTGTVAPFVNIPREVQPDFRRLQEIETALAAGQMPPPPDAGMESELVLHAVPARLPEAHPRTGPPGITDRKTGRTAGSEPPARPPSPETVRHE
Ga0308417_10025118F004170GGAGMSDPSLFASPLARQAARNLCTVEWLSENNIWSSDSFYRRYFWRTRRMMAVTPDEAAAWLPALAFAVSCEKDADVLAEFARQPLPEPLPPEALPWCAALIRSWKRQRTATPWGKTVRLAALVRLDRRVERLPEWLREARRAPDLGWYDRYLRLAALAVWQPRPGDGPPHGDKAEAAQAWVRFWEERYRTPDSALDGLIAAAALLHLAEAGWLPSGPSPERVREEFRQRVQQVQPWTTSYHEQSVLRMLLASVPADASSPEQQDIMKWLELTHENVPWEKREAVWEMLAAWQREGVLERCGGSLAPDLARALEWEDYGDVLIAMAGYVPGLAEVRAHPEAMRAIIARWEALSRSDNRRIRRTAWVARWNFLRAGVLTAEEQGRFDADYVEAIGSENDRELLALAQITPPGTFPLAIWTRRLLDQDDRCRLEAGLAIHGWLVEVMEGTSGEWRMASGKEANGEWRVVRKRMANGEWRVEDHHSLLATRCSLLAITRRQMRQALRRAGQEGADNRPVAPFVNLPPEVLPDFRRLREIETALAAGRLPPSPDAAAENRATPRAVAARLPEAHPRTGPHGITDRTTGRTAGSEPPARHPFPEAGRH
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