NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1006557

Scaffold Ga0308417_1006557


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1006557 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6896
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028057Metagenome192N
F056129Metagenome138Y
F061618Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0308417_10065573F061618AGGAMRDFLLQTLSPEGHYRILVVWPRKLLVPVIRLIDRTLAIPDDAAISVLEISPGEHSSRVRRLGRELCFAGLPVFDEGEGRLRVYCSRPGAKIVYEAFQFNKVVSRDAEHLRNLVELDDVKGIVDIVGKVNYRLVGEDSLIVEGASLRGDKAFTSYATYDLPSGAELVGA
Ga0308417_10065574F028057N/AMTRLNTNQKRRLSRAISRAASAELAARQAQLRLIRAERRVVAEEFEALRRIAIIISLPFMFLLCAIFSSFWFILIAEAIAKSAK
Ga0308417_10065575F056129AGGAGMNKEYNGWPNRWTWTVSLYCASLEDVQYAREWLEEIASELPLIAMDLLTSAIAEVEWDYLEQVFAEGGDTTADDADDN
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