NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308417_1014923

Scaffold Ga0308417_1014923


Overview

Basic Information
Taxon OID3300031950 Open in IMG/M
Scaffold IDGa0308417_1014923 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4089
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001381Metagenome / Metatranscriptome709Y
F002229Metagenome / Metatranscriptome580Y
F008135Metagenome / Metatranscriptome338Y
F053114Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0308417_101492310F053114N/ADIADYTRLMYMLVDYVAYASIVQQALLAQLAIVVVGLGFRAWLVIRRIVLVS
Ga0308417_10149233F008135AGGAGGMRAMNDPRTERVLTEAGASIARVLDARQRHAVVLAIEVCWYIVAALPPDEDMTCRDVVRLLRWFRNGFQEDGREDGDGD
Ga0308417_10149234F002229GAGGMVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGIGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACIPGEMRALCGDGCVDDDDEED
Ga0308417_10149239F001381GAGMQYVVATLYVLLWLALAAAAALWLPRWALPAALVQLAVAYVMLRSWLTAAAGGDD
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