NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10010969

Scaffold Ga0315904_10010969


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10010969 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11635
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (18.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048940Metagenome / Metatranscriptome147Y
F058096Metagenome / Metatranscriptome135Y
F101038Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1001096912F101038N/AMELTNSFPPVDSTINKLKQFDYIQFGADAIKFAATVSAIVVAAVSYGWTAFQLWWDDNGEATQVNFIRFVVNVIDFVAAIVIAIPKIYRWVKLNTNRLVDYLFFQVAFA
Ga0315904_1001096923F058096N/AMNAQLSIDECKVMWVVGALERLATLGMIGPDIPLQLSADAVEDYMEIDNHRNLLFESDFEIVSIFNALSKDECVPEPEPDDIDAIIDLILQYKNNRTEIVKFALSHQTV
Ga0315904_1001096929F048940N/AMTAAQRMEKQFFINFISLINEVQGKTKLPSQIVKNRKSAWVKQVSNPKQKKDALSFV
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