NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10021765

Scaffold Ga0315904_10021765


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10021765 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7667
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006545Metagenome / Metatranscriptome370Y
F012773Metagenome / Metatranscriptome277Y
F037075Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100217651F037075GGAGMVSEDRLKNWAFYCAWGHVGPEHRTQCASAEGNYESEDVFEGEEPRIEPDMIDGQAVEDAVRELPDVSRRVLKARYIQYPYNLSHNVAQRLRMSTDKLEAEL
Ga0315904_1002176516F012773AGGMIGLLGKPRESKEMEGGLLDESGECPLATQDETINKGNKQKAILTARYGPSEGEEKCGNCEYGMKLKGCGLGKDEVFCDVYEFKCSKENVCDAWESMEEEGED
Ga0315904_1002176519F006545N/AMKIKDAAKRFEAYDRATTKKMAEHNRSGGDVRAPVRSLKGASTGDKYDRAKFIYRKAAQALSAGHPLKDEKGRATPAALQFKRWAAKVPQNQADLQNLKALGTRLKERYKPK
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