NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10086399

Scaffold Ga0315904_10086399


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10086399 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3341
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005092Metagenome / Metatranscriptome412Y
F007363Metagenome / Metatranscriptome352Y
F011299Metagenome / Metatranscriptome292Y
F013526Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100863993F011299N/AMKNYYSPTAEILRYVSDKTHPAVFSKMVVDFAEMFAKENPKFDAVKFYEEANYHVPKFTS
Ga0315904_100863995F013526GGAGGMKKNVLISFITEADTDLEAVFDLNKVFLALPESDLVKFDVFDVLEVVE
Ga0315904_100863996F005092AGGAMNKLEIALKIIANCDFCNGKGYSYWGGSDDEYEIESCICNVYDLILDDNGDVIWDNGLLSEPELFTSMEAN
Ga0315904_100863999F007363AGGAMRSYSIVDLLIDQYYAPTSLARRFNGGIINYASKRDDVYLSEGYEAYSIRYRPTGSIQDQWATVAVRLPD
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