NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10480214

Scaffold Ga0315904_10480214


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10480214 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071173Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_104802141F071173N/ASFNILETGVDGDGDPIFSYFITYKSTIPQDVSGVVSEIGLYPGDRMSFNNFDSKFITSFTNEFNWFNGTENPLSQGNTQDSNGNYTFLSKVSDSMIRVDVASGQTKEYINSLISDDISGYSINDTISIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPESGTGDKIQTLSLNNLFSNYTASPNLPDPSSITKIGVATTATGGNTTVYFDAIRINDQDTFDPGYGLISRSVLSTPLIKKPGRPVDIEYKLQLEF
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