NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10535258

Scaffold Ga0315904_10535258


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10535258 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000813Metagenome / Metatranscriptome880Y
F005878Metagenome / Metatranscriptome387Y
F085644Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_105352581F085644N/AMPKPHSIAYIKQLLEWGFDKEFIARDMGVNLASLEVRLNRAKKREQDGNQGS
Ga0315904_105352583F005878GGAMDIPKINEMHPFKCGPCKKVTPHHYITKYESEIQEGDWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0315904_105352584F000813N/AKSKQYSLELAETGALGRALNLAGYFAKPSGVPKKPIQTTKPELAEFVKEQRPNYPEPVVWDVSAIAEELGAEVIDEIPLCAGGDGPMVLKTGTKEGKEYRGWVCSTPKSGHPARWMRIGSDGKWTFQK
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