NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315294_10175611

Scaffold Ga0315294_10175611


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10175611 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2151
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 10502(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F010618Metagenome301N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_101756111F009266AGGAMTSKEIKILDKLIQELCEKQDRIKIMRQTLGINTDFDFLREVEIIESLYKSVLENRKYDKATYFSCATSGWHVVYLRDKKTYKKGEENRIQIYFSFVWTDNLD
Ga0315294_101756112F002398GGAMIALISVFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEEIPSFPRLNIIEKSKFDFFAYLDTIGIEHSKVGNYYFFNKKR
Ga0315294_101756115F002406GGAMSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFENDE
Ga0315294_101756116F010618AGGAGLTLKELILKLQELEKKYEQYSKDTEVVIAVHSKNEYNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIIQED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.