NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10728918

Scaffold Ga0315294_10728918


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10728918 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002433Metagenome / Metatranscriptome559Y
F009883Metagenome / Metatranscriptome311Y
F025279Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_107289181F025279AGGMGFLDNYEGNKERTDRWIKTYPEGRLEATIINFDADKGSILVRAAAWRNQTEIEPAGIDFAYGYQAAYNANMKRWFVEDTVTSALMRVMALVMGNTEKATKETMYLVKQSNDEVAKDYDYWTTKHGDVPSHA
Ga0315294_107289182F009883GGAGMNELSIVIFMVIAGALWALMAYSVGFKEGQRQGYSKGRAVARHAVSADRKVK
Ga0315294_107289183F002433N/AKEVSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEQRLDTLILELALKK
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