NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_11608426

Scaffold Ga0315294_11608426


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_11608426 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009883Metagenome / Metatranscriptome311Y
F104770Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0315294_116084261F104770GGCGGMGFLDGYEASRQRLERWIATYPTGRIETRIMEFNAEKGYVFVEARAFRTAEDTLPAGIDYAYGYQGAYTQNMKRWFVEDTVTSAIMRVQQLVMGGAERTVRETMEQI
Ga0315294_116084262F009883N/ASQNREQQMNEIGIVVAMSIACILWAVVSYSIGYKEGQREGYTRGRAVSRHISQLDRAVK

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