NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308410_1071795

Scaffold Ga0308410_1071795


Overview

Basic Information
Taxon OID3300031958 Open in IMG/M
Scaffold IDGa0308410_1071795 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015735Metagenome / Metatranscriptome252Y
F076977Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308410_10717952F015735GAGGMVVYHHWSVEWHPRDVDPPGGLLRVVCIARRAVVDPFAGPGPFPPDIDRAVRAWNLIASGGAVDRGAGYEVVWRVLVVADDADGDALDGAWSDDQVYRVRRRLLRWMMRSQCPIPALADHFAVEHFWASPAYFGLLEPGA
Ga0308410_10717954F076977N/AFVDSSYTRGEMVELPARMQFLRDGSGRPVIKLYVDQGVR

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