NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318530_10441435

Scaffold Ga0318530_10441435


Overview

Basic Information
Taxon OID3300031959 Open in IMG/M
Scaffold IDGa0318530_10441435 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072693Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0318530_104414351F072693AGGAGMKKVFLLLSTSILSIILGCSGNSQKTVSKSAAAVVQASVAPASTFSVAEPATVLPVPSVGQANRQAWRSENVKDHLGNAVALKGTSLDGKFDLIIVQRGTHSFLSFVKHARWESVYNQPAKGKLMFLRVKFEDGQEKRIEWDQLGFATEHLYSVLWSYP
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